Data set for "Diverse long-range axonal projections of excitatory layer 2/3 neurons in mouse barrel cortex"
| Main Authors: | Yamashita, Takayuki, Vavladeli, Angeliki, Pala, Aurelie, Gala, Katia, Crochet, Sylvain, Petersen, Sara SA, Petersen, Carl CH |
|---|---|
| Format: | info dataset eJournal |
| Bahasa: | eng |
| Terbitan: |
, 2018
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| Subjects: | |
| Online Access: |
https://zenodo.org/record/1220711 |
Daftar Isi:
- Data set for: Yamashita T, Vavladeli A, Pala A, Galan K, Crochet S, Petersen SSA, Petersen CCH (2018) Diverse long-range axonal projections of excitatory layer 2/3 neurons in mouse barrel cortex. Front Neuroanat 12: 33. https://doi.org/10.3389/fnana.2018.00033 There are 25 files in this data upload: 1. '2018_Yamashita_FrontNeuroanat.pdf' - this a pdf version of the online publication. 2. 'Yamashita_Figure2_Quantification.xlsx' - this is a Microsoft Excel file giving the locations of high density axonal projections from layer 2/3 pyramidal neurons in the mouse C2 barrel column in the coordinate frame of Paxinos & Franklin (2001) The mouse brain in stereotaxic coordinates. Academic Press. The data are plotted in Figure 2 of Yamashita et al., 2018. 3. 'Yamashita_Figure7_Quantification.xlsx' - this is a Microsoft Excel file giving the dendritic length, number of dendrites, number of dendritic nodes and total axonal length, as well as the axonal length in the different projection zones for each reconstructed neuron. The data are plotted in Figure 7 of Yamashita et al., 2018. 4. 'Yamashita_SupMov1_S2P_AP049.mov' - this is a QuickTime video file, showing the 3D structure of neuron AP049 featured in Figure 3 of Yamashita et al., 2018. 5. 'Yamashita_SupMov2_M1P_TY308.mov' - this is a QuickTime video file, showing the 3D structure of neuron TY308 featured in Figure 5 of Yamashita et al., 2018. 6. 'AV198.zip' - this zipped folder contains data relating to mouse AV198: a) 'AV198_stack.tif' the z-stack of whole-brain fluorescence images from expression of tdTomato in layer 2/3 neurons of the C2 barrel column of mouse AV198. b) 'AV198_ROI_Box.zip' can be loaded into FIJI (https://fiji.sc) and indicates projection regions by a box. c) 'AV198_ROI_Point.zip' can be loaded into FIJI (https://fiji.sc) and indicates projection regions by a point. d) 'AV198_Paxinos' is a folder showing the coronal fluorescent brain sections in pdf format overlaid on the equivalent drawing from Paxinos & Franklin (2001) The mouse brain in stereotaxic coordinates. Academic Press. 7. 'AV199.zip' - same as 'AV198.zip' but for mouse AV199. 8. 'AV201.zip' - same as 'AV198.zip' but for mouse AV201. 9. 'AV202.zip' - same as 'AV198.zip' but for mouse AV202. 10. 'AV203.zip' - same as 'AV198.zip' but for mouse AV203. 11. 'AP042.ASC' - Neurolucida (http://www.mbfbioscience.com/neurolucida) data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse AP042. Brain contours are also traced. 12. 'AP044.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse AP044. Brain contours are also traced. 13. 'AP046.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse AP046. Brain contours are also traced. 14. 'AP047.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse AP047. Brain contours are also traced. 15. 'AP049.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse AP049. Brain contours are also traced. 16. 'TY220.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY220. Brain contours are also traced. 17. 'TY288.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY288. Brain contours are also traced. 18. 'TY300.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY300. Brain contours are also traced. 19. 'TY302.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY302. Brain contours are also traced. 20. 'TY308.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY308. Brain contours are also traced. 21. 'TY310.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY310. Brain contours are also traced. 22. 'TY337.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY337. Brain contours are also traced. 23. 'TY345.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY345. Brain contours are also traced. 24. 'TY367.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY367. Brain contours are also traced. 25. 'TY369.ASC' - Neurolucida data file of the 3D reconstruction of axon and dendrite from the single neuron labelled in mouse TY369. Brain contours are also traced.