TiReX: Replica-exchange molecular dynamics using Tinker
| Main Author: | CPC, Mendeley |
|---|---|
| Other Authors: | Penev, Evgeni S., Lampoudi, Sotiria, Shea, Joan-Emma |
| Format: | Dataset |
| Terbitan: |
Mendeley
, 2009
|
| Subjects: | |
| Online Access: |
https:/data.mendeley.com/datasets/z9mpsfsw7c |
| ctrlnum |
0.17632-z9mpsfsw7c.1 |
|---|---|
| fullrecord |
<?xml version="1.0"?>
<dc><creator>CPC, Mendeley</creator><title> TiReX: Replica-exchange molecular dynamics using Tinker </title><publisher>Mendeley</publisher><description>Abstract
We present a driver program for performing replica-exchange molecular dynamics simulations with the Tinker package. Parallelization is based on the Message Passing Interface, with every replica assigned to a separate process. The algorithm is not communication intensive, which makes the program suitable for running even on loosely coupled cluster systems. Particular attention is paid to the practical aspects of analyzing the program output.
Title of program: TiReX
Catalogue Id: AEEK_v1_0
Nature of problem
Replica-exchange molecular dynamics.
Versions of this program held in the CPC repository in Mendeley Data
AEEK_v1_0; TiReX; 10.1016/j.cpc.2009.06.005
This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)</description><subject>Physical Chemistry</subject><subject>Molecular Physics</subject><subject>Computational Physics</subject><contributor>Penev, Evgeni S.</contributor><contributor>Lampoudi, Sotiria</contributor><contributor>Shea, Joan-Emma</contributor><type>Other:Dataset</type><identifier>10.17632/z9mpsfsw7c.1</identifier><rights>Computer Physics Communications Journal Licence</rights><rights>https://www.elsevier.com/about/policies/open-access-licenses/elsevier-user-license/cpc-license/</rights><relation>https:/data.mendeley.com/datasets/z9mpsfsw7c</relation><date>2009-10-01T11:00:00Z</date><recordID>0.17632-z9mpsfsw7c.1</recordID></dc>
|
| format |
Other:Dataset Other |
| author |
CPC, Mendeley |
| author2 |
Penev, Evgeni S. Lampoudi, Sotiria Shea, Joan-Emma |
| title |
TiReX: Replica-exchange molecular dynamics using Tinker |
| publisher |
Mendeley |
| publishDate |
2009 |
| topic |
Physical Chemistry Molecular Physics Computational Physics |
| url |
https:/data.mendeley.com/datasets/z9mpsfsw7c |
| contents |
Abstract
We present a driver program for performing replica-exchange molecular dynamics simulations with the Tinker package. Parallelization is based on the Message Passing Interface, with every replica assigned to a separate process. The algorithm is not communication intensive, which makes the program suitable for running even on loosely coupled cluster systems. Particular attention is paid to the practical aspects of analyzing the program output.
Title of program: TiReX
Catalogue Id: AEEK_v1_0
Nature of problem
Replica-exchange molecular dynamics.
Versions of this program held in the CPC repository in Mendeley Data
AEEK_v1_0; TiReX; 10.1016/j.cpc.2009.06.005
This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019) |
| id |
IOS7969.0.17632-z9mpsfsw7c.1 |
| institution |
Universitas Islam Indragiri |
| affiliation |
onesearch.perpusnas.go.id |
| institution_id |
804 |
| institution_type |
library:university library |
| library |
Teknologi Pangan UNISI |
| library_id |
2816 |
| collection |
Artikel mulono |
| repository_id |
7969 |
| city |
INDRAGIRI HILIR |
| province |
RIAU |
| shared_to_ipusnas_str |
1 |
| repoId |
IOS7969 |
| first_indexed |
2020-04-08T08:21:41Z |
| last_indexed |
2020-04-08T08:21:41Z |
| recordtype |
dc |
| _version_ |
1686587556721852416 |
| score |
17.538404 |