ANALISIS HOMOLOGI, PHYLOGENETIC TREE DAN PREDIKSI EPITOP GEN PENYANDI 37 kDa ompA DARI ISOLAT Pasteurella multocida ASAL NUSA TENGGARA TIMUR PENELITIAN EKSPLORATIF LABORATORIS
| Main Author: | ARINI RAHMI DEWI, 061514253020 |
|---|---|
| Format: | Thesis NonPeerReviewed Book |
| Bahasa: | ind |
| Terbitan: |
, 2019
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| Subjects: | |
| Online Access: |
http://repository.unair.ac.id/83352/1/TPKMV.%2006-19%20%20Dew%20a%20Abstrak.pdf http://repository.unair.ac.id/83352/2/TPKMV.%2006-19%20%20Dew%20a.pdf http://repository.unair.ac.id/83352/ http://lib.unair.ac.id |
Daftar Isi:
- Thirty seven kDa omp A gene of Pasteurella multocida isolates from NTT buffalo, NTT cattle, and Katha strains were analyzed nucleotide sequence homology and phylogenetic tree with ruminant isolates from various countries in the world: India, China, Iran, and USA from GenBank data and B cell epitope predictions from both NTT isolates. Three Nucleotide sequences from three isolates were homology analyzed using BLAST at NCBI then phylogenetic tree using MEGA-X program and epitope prediction by online program at IEDB. The results showed 93-100% homology, phylogenetic tree of buffalo isolate and strain Katha with bovine from India, China, and Iran; buffalo from India; yak from China; calf from India; and cattle from India. Prediction tools found 5 peptida from both NTT and strain Katha isolates which had a logscore value above 1.