Dataset for a Mouse and Rat heart trancriptomic and co-expression network analysis
| Main Authors: | Loren Reyes, Pía Francesca, Michoel, Tom, Joshi, Anagha, Devailly, Guillaume |
|---|---|
| Format: | info dataset Journal |
| Terbitan: |
, 2017
|
| Subjects: | |
| Online Access: |
https://zenodo.org/record/839015 |
Daftar Isi:
- mouse_heart_data and rat_heart_expression contain GEO expression matrix for mouse and rat experiments. gse_gsm_mouse.txt and gse_gsm_rat.txt contain experiment IDs and series IDs from GEO. heart_quantNormData_mouse.tsv and heart_quantNormData_rat.tsv contain normalised expression matrices. heart_quantNormData_mouse_1sd.tsv and heart_quantNormData_rat_1sd.tsv contain the normalised expression matrices restricted to genes with a standard deviation higher than 1. fileForSCHypeThreshold0.5_heart.txt and fileForSCHypeThreshold0.75_heart.txt are the input for SCHype. schype_output_0.5th_heart.nodes.txt, schype_output_0.5th_heart.edges.txt, schype_output_0.75th_heart.nodes.txt and schype_output_0.75th_heart.edges.txt are the outputs. geneLists.zip contains gene lists used for ontology analysis (ENSEMBL gene id)
- Do contact me if you encounter any issues with the files.