FIGURE 3a. Bayesian phylogeny inferred from cyt b in Specific limits and emerging diversity patterns in East African populations of laminate-toothed rats, genus Otomys (Muridae: Murinae: Otomyini): Revision of the Otomys typus complex 3024
| Main Authors: | Taylor, Peter J., Lavrenchenko, Leonid A., Carleton, Michael D., Verheyen, Erik, Bennett, Nigel C., Oosthuizen, Carel J., Maree, Sarita |
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| Format: | info Image Journal |
| Terbitan: |
, 2011
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| Subjects: | |
| Online Access: |
https://zenodo.org/record/5280590 |
Daftar Isi:
- FIGURE 3a. Bayesian phylogeny inferred from cyt b sequences partitioned by codon position for 34 East African specimens of O. typus s.l. and O. tropicalis s.l. in relation to representatives of seven Otomys species and Parotomys brantsii from eastern, western and southern Africa. Representatives of nine murine taxa served as outgroups (see Appendix 1). Nodal support indices for the main clades (annotated 1 to 8) and subclades (a, b, c, d and e), as well as supported deeper nodes (A, H, I, M, N, O) are given beside the phylogram in the following order: Bayesian posterior probabilities (BPP)/ bootstrap support from 1000 replicates for maximum likelihood (MLbs), under an unpartitioned GTR+I+G model/ unweighted parsimony (UwPbs), six-parameter-weighted parsimony partitioned by codon positions (6PPbs)/ neighbour-joining using uncorrected p-distances (Njpbs)/ neighbour-joining using GTR+I+G-corrected distances (Njcbs). Estimated divergence dates (Myr) for the major lineages identified in the cyt b phylogeny are indicated to the left of each node. Bayesian estimation of divergence times was conducted under a relaxed clock model using BEAST v.1.4. Four well established murine fossil calibration points were specified (Pocock 1987; Rowe et al. 2008, see text).
- Published as part of Taylor, Peter J., Lavrenchenko, Leonid A., Carleton, Michael D., Verheyen, Erik, Bennett, Nigel C., Oosthuizen, Carel J. & Maree, Sarita, 2011, Specific limits and emerging diversity patterns in East African populations of laminate-toothed rats, genus Otomys (Muridae: Murinae: Otomyini): Revision of the Otomys typus complex 3024, pp. 1-66 in Zootaxa 3024 (1) on page 18, DOI: 10.11646/zootaxa.3024.1.1, http://zenodo.org/record/5280584