Resolving Organoid Brain Region Identities by Mapping Single-Cell Genomic Data to Reference Atlases
| Main Authors: | Jonas Simon Fleck, Fátima Sanchís-Calleja, Zhisong He, Malgorzata Santel, Michael James Boyle, J. Gray Camp, BarbaraTreutlein |
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| Format: | info dataset Journal |
| Terbitan: |
, 2021
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| Subjects: | |
| Online Access: |
https://zenodo.org/record/5148001 |
Daftar Isi:
- Data underlying the figures in the publication “Resolving organoid brain region identities by mapping single-cell genomic data to reference atlases”, published in Cell Stem Cell, 2021, 28, 1148–1159. https://www.sciencedirect.com/science/article/pii/S1934590921000655 Table of contents: 1. patscreen_srt.rds; Numerical data for Figure 7: RNA-seq data of a patterning screen in organoids with an array of small molecules. The dataset is in the rds data format, which can be opened in the R programming language using the function `readRDS()`. Once opened, the dataset is a Seurat object (https://satijalab.org/seurat/) and contains both the transcript counts and the metadata for all samples in the screen. The raw data used in figure 7 was also deposited in ArrayExpress (https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-10037/)