Data From: Human-provisioned foods reduce gut microbiome diversity in American black bears (Ursus americanus)
| Main Authors: | Gillman, Sierra, Lafferty, Diana, McKenney, Erin |
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| Format: | Article Journal |
| Terbitan: |
, 2021
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| Subjects: | |
| Online Access: |
https://doi.org/10.1093/jmammal/gyab154 |
Daftar Isi:
- Data (both phyloseq-R object from imported qiime2 artifacts, and demultiplexed EMP-paired end sequences from Argonne National laboratory), R code Gillman et al 2021. "MetaFile.tsv" is the metadata file including sampleID, stable carbon and nitrogen values, sex, age-class etc for each sample. "BlackBeardemuxsequences.qza" is EMP-Paired end sequences used in QIIME2 version 2019.4. "OTU_table.qza" QIIME2 artifact with ASVs called with DADA2 "taxonomy.qza" QIIME2 artifact "rooted-tree.qza" QIIME2 artifact created with MAFFT "phyloseq.rds" phyloseq object created with MetaFile.tsv, OTU_table.qza, taxonomy.qza, and rooted-tree.qza and used for downstream analysis in R. "phyloseq_srs.rds" normalized "phyloseq.rds" object. Supplementary Data SD3.pdf/RMD code for analysis and figure creation in R.