Dataset: Bumble bee parasite strains vary in susceptibility to phytochemicals
| Main Authors: | Palmer-Young, Evan C, Sadd, Ben M, Irwin, RE, Stevenson, PC, Adler, LS |
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| Format: | info dataset |
| Terbitan: |
, 2016
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| Subjects: | |
| Online Access: |
https://zenodo.org/record/50349 |
Daftar Isi:
- The two spreadsheets contain data on phytochemical concentrations in nectar and pollen of field samples. The zipped folder contains all of the data for the cell culture experiments testing the effects of phytochemicals on growth of Crithidia bombi. Each folder contains the results of one week's experiment The OD readings for each strain are in a separate .csv file within the folder In the csv files: The column "conc" refers to concentration of the phytochemical in ppm, except for caryophyllene, which is in ppb The columns "net0" through "net120" contain the net OD for each sample at the 6 timepoints, 0h (start of experiment) through 120h For the 3 compounds for which we modeled EC50 values (anabasine, eugenol, and thymol) the folder also contains (1) "(name of experiment).grofit.R" file R script to calculate growth integral for each sample (2) "mcmc_input.txt" file containing the calculated growth integrals (3) .jags file containing the specifications of the MCMC model (4) "fit-evan-model.R" file R script to calculate dose-response curves and EC50 values Note that for the calculation of integrals, the thymol grofit.R script omits samples in columns 2,3, and 4 and the eugenol grofit.R script omits samples in columns 3 and 4 Samples in these columns displayed poor growth, which we attributed to exposure to phytochemicals that volatilized from the neighboring control wells, which contained high concentrations of thymol and eugenol