Data from: REvoSim: organism-level simulation of macro and microevolution
| Main Authors: | Garwood, Russell J., Spencer, Alan R. T., Sutton, Mark D. |
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| Format: | info dataset Journal |
| Terbitan: |
, 2019
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| Subjects: | |
| Online Access: |
https://zenodo.org/record/4973624 |
Daftar Isi:
- Macroevolutionary processes dictate the generation and loss of biodiversity. Understanding them is a key challenge when interrogating the earth-life system in deep time. Model-based approaches can reveal important macroevolutionary patterns, and generate hypotheses on the underlying processes. Here we present and document a novel model called REvoSim (Rapid Evolutionary Simulator) coupled with a software implementation of this model. The latter is available here as both source code (C++/Qt, GNU General Public License), and as distributables for a variety of operating systems. REvoSim is an individual-based model with a strong focus on computational efficiency. It can simulate populations of 105–107 digital organisms over geological timescales on a typical desktop computer, and incorporates spatial and temporal environmental variation, recombinant reproduction, mutation and dispersal. Whilst microevolutionary processes drive the model, macroevolutionary phenomena such as speciation and extinction emerge. We present results and analysis of the model focussing on validation, and note a number potential applications. REvoSim can serve as a multipurpose platform for studying both macro- and microevolution, and bridges this divide. It will be continually developed by the authors to expand its capabilities and hence its utility.
- Supplementary videoAn HDMI MP4 video file showing the visualisations during several different REvoSim runs.Garwood_et_al_2018_SI_video.mp4Supplementary figuresA PDF file with supplementary figures: a graph of fitness using alternative error bars, and numerous visualisations captured during an exemplar REvoSim run.Garwood_et_al_REvoSim_SI_figures.pdfSource code - latest versionThis DOI resolves to the latest release of REvoSim which is automatically pushed through to Zenodo. The repository contains the source code for REvoSim and EnviroGen. Further details can be found within the readmes.Source code - version 2.0.0This DOI resolves to the release of REvoSim v2.0.0, which accompanies this paper. The repository contains the source code for REvoSim and EnviroGen. Further details can be found within the readmes.REvoSim GitHub release pageAt this URL are the releases of REvoSim. Each release contains the source code for REvoSim and EnviroGen. Further details can be found within the readmes. Releases also include redistrubtables for both pieces of software for numerous operating systems.