Neurosim-lab/netpyne: v0.9.9
| Main Authors: | Salvador Dura-Bernal, Joe Graham, Padraig Gleeson, ericaygriffith, Adrian Quintana, jjcarre, Cliff Kerr, William Lytton, David Kedziora, barefoothiker, kelley92, Ariel Alejandro Brassesco, Matteo Cantarelli, jchen6727, Afonso Pinto, Sam Neymotin, campbell-mclauchlan, Facu, Gil Lee, adamjhn, Blake Caldwell, Eric Thomson, IPSIA, FernandoSBorges, Lucas, Tom Morse |
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| Format: | info software Journal |
| Terbitan: |
, 2021
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| Online Access: |
https://zenodo.org/record/4579882 |
Daftar Isi:
- New features Plot current source density (CSD) from local field potential (LFP) simulated data Additional customization of 3D shape plot: show voltage as color, change proportions, include axis labels Enable modifyConns based on properties of presynaptic neurons Replaced -np with -n so compatible for all commands: mpiexec/mpirun/srun Updated netrxd.py and network.py to include RxD's Parameter class, naming of States and Regions, and specification of Region geometries that do not require arguments like 'membrane' and 'inside' Improved recordTraces such that the cond 'gid' can accept a list of numbers as well as a single number Added a new tutorial going through use of NetPyNE with virtual environments and Jupyter notebooks Added cfg.use_fast_imem to enable recording membrane voltage via seg.imembrane Added swc import ability to importCell (and thus importCellParams) Batch now polls processes, prints their output and terminates them once completed Updated web documentation to explain importing SWC files and add Recording Configuration section Added link to Jupyter notebook tutorial and video to website front page Bug fixes Made rate_b be positional instead of keyword argument in rxd multiCompartmentReaction Check if _morphSegCoords exists in population before using Fixed bug to avoid recursive creating of synMechs when loading with cfg.oneSynPerNetcon=True Fixed an issue with running rxd code twice Wait until all subprocesses have ended before completing mpi_bulletin batches Fixed repeated rxd simulation issue for rates and reactions Fixed pointNeuron spikePattern 'sync' option