APEC: Accessibility Pattern based Epigenomic Clustering algorithm for single cell ATAC-seq data
| Main Author: | Li, Bin |
|---|---|
| Format: | info software Journal |
| Terbitan: |
, 2020
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| Subjects: | |
| Online Access: |
https://zenodo.org/record/3763155 |
Daftar Isi:
- APEC can perform fine cell type clustering on single cell chromatin accessibility data from scATAC-seq, snATAC-seq, sciATAC-seq or any other relevant experiment. It can also be used to evaluate gene expression from relevant accesson, search for differential motifs/genes for each cell cluster, find super enhancers, and construct pseudo-time trajectory (by calling Monocle).