Discriminant analysis in Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization
| Main Author: | Bigot, Thomas |
|---|---|
| Format: | Article |
| Bahasa: | eng |
| Terbitan: |
, 2019
|
| Subjects: | |
| Online Access: |
https://zenodo.org/record/3547558 |
Daftar Isi:
- This archive contains necessary files to perform a discriminant analysis in order to classify the Kandabadicivirus sequence among many hosts: arthropods, birds, mammals, mollusks, and plants. First, decompress the fasta sequences (sequences.zip) in a directory named sequences. Then: for i in sequences/*.fasta; do echo $i; python3 scripts/fasta2count.py $i ${i%.fasta}.csv; done You now have csv files along with corresponding fasta files (csv are provided in this archive). You can now perform discriminantAnalysis.R in R software to obtain the discriminant analysis and make a graphical output named "discrimin.pdf".