Simulated Arabidopsis thaliana sequencing datasets for chloroplast assembler benchmarking
| Main Authors: | Ankenbrand Markus J, Förster Frank |
|---|---|
| Format: | info dataset |
| Bahasa: | eng |
| Terbitan: |
, 2019
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| Subjects: | |
| Online Access: |
https://zenodo.org/record/2652105 |
Daftar Isi:
- Changes Fixed non-circular sampling from chloroplast and mitochondrion in version 1.1.0 Fixed off-by-one error in reverse read in version 1.0.0 Purpose and Documentation See: github.com/chloroExtractorTeam/benchmark Original data The original Arabidopsis thaliana sequences were downloaded from TAIR: The Arabidopsis Information Resource (TAIR) on www.arabidopsis.org, Mar 22, 2019 available under the TAIR Terms of Use Tanya Z. Berardini, Leonore Reiser, Donghui Li, Yarik Mezheritsky, Robert Muller, Emily Strait and Eva Huala. "The Arabidopsis Information Resource: Making and mining the "gold standard" annotated reference plant genome." genesis 2015 doi:10.1002/dvg.22877 Programs used to generate this data - seqkit (v0.10.1): Shen W, Le S, Li Y, Hu F (2016) "SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation." PLOS ONE 11(10): e0163962. doi:10.1371/journal.pone.0163962
- Full documentation: https://github.com/chloroExtractorTeam/benchmark/blob/master/03_representative_datasets.md