Simulated Arabidopsis thaliana sequencing datasets for chloroplast assembler benchmarking
| Main Authors: | Ankenbrand Markus J, Förster Frank |
|---|---|
| Format: | info dataset |
| Bahasa: | eng |
| Terbitan: |
, 2019
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| Subjects: | |
| Online Access: |
https://zenodo.org/record/2622876 |
Daftar Isi:
- ## Purpose and Documentation See: https://github.com/chloroExtractorTeam/benchmark ## Original data The original *Arabidopsis thaliana* sequences were downloaded from TAIR: The Arabidopsis Information Resource (TAIR), ftp://ftp.arabidopsis.org/home/tair/Sequences/whole_chromosomes/ on www.arabidopsis.org, Mar 22, 2019 available under the [TAIR Terms of Use](http://www.arabidopsis.org/doc/about/tair_terms_of_use/417) Tanya Z. Berardini, Leonore Reiser, Donghui Li, Yarik Mezheritsky, Robert Muller, Emily Strait and Eva Huala The Arabidopsis Information Resource: Making and mining the "gold standard" annotated reference plant genome. genesis 2015 doi: 10.1002/dvg.22877 ## Programs used to generate this data - [seqkit](https://github.com/shenwei356/seqkit) (v0.10.1): Shen W, Le S, Li Y, Hu F (2016) SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation. PLOS ONE 11(10): e0163962. [https://doi.org/10.1371/journal.pone.0163962](https://doi.org/10.1371/journal.pone.0163962)
- Full documentation: https://github.com/chloroExtractorTeam/benchmark/blob/master/03_representative_datasets.md